Question: ANOVA test for six time points having three replicates for each time point
0
gravatar for anshulmbi
4 weeks ago by
anshulmbi10
anshulmbi10 wrote:

Hi !!

I have a RNA-Seq data and got gene count from Ht-Seq Tool (Galaxy). In my data we have 6 time points and each time point have 3 replicates. I want to perform ANOVA test for my data. Please suggest me how to do this with R or any other tool.

Thanks!!

4           8           12          16          20          24      
V1  V2  V3  V4  V5  V6  V7  V8  V9  V10 V11 V12 V13 V14 V15 V16 V17 V18

Gene_2207 44 34 41 64 42 52 29 36 39 37 30 27 60 36 52 53 51 49

Gene_2407 233 185 212 197 242 206 154 153 155 159 153 127 240 193 228 151 198 208

Gene_2482 16 16 15 26 24 14 21 22 24 21 21 25 30 25 26 25 27 36

rna-seq • 62 views
ADD COMMENTlink modified 4 weeks ago by Jennifer Hillman Jackson25k • written 4 weeks ago by anshulmbi10
0
gravatar for Jennifer Hillman Jackson
4 weeks ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

Try using DeSeq2 within Galaxy.

Tutorials with examples: https://galaxyproject.org/learn/

Thanks! Jen, Galaxy team

ADD COMMENTlink written 4 weeks ago by Jennifer Hillman Jackson25k
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