Question: NGS Qc: MultiQC not recognizing FASTQC raw results from list
gravatar for rajeev.vikram
13 days ago by
rajeev.vikram0 wrote:


I am trying to aggregate results from FAST Qc lists by MultiQC, but MUltiQC isnt recognizing the list . I have tried to verify the accepted format (txt), but to no avail. Also, Trimmomatic is throwing up error message (but still works).

I have multiple bam files from single cell RNA-Seq data data analysis, will mergigng all these bam files will be helpful in downstream processing? (for the creation of an expression matrix) Any suggestions will be helpful. Thanks.

ADD COMMENTlink modified 12 days ago by Jennifer Hillman Jackson24k • written 13 days ago by rajeev.vikram0
gravatar for Jennifer Hillman Jackson
12 days ago by
United States
Jennifer Hillman Jackson24k wrote:


These functions are working at This is a graphic for using MultiQC on FastQC output (in a dataset collection of BAMs, with collection type = LIST):

Help for using collections with FastQC is specifically covered in this tutorial (NGS logistics):

With full Dataset Collection operations covered in this tutorial:

Many other Galaxy tutorials make use of collections in example analysis workflows. Please see all Galaxy tutorials here:

If you are working somewhere else (not at Galaxy Main, and the functions are not working as expected when using the methods described above, contact the administrators of that server to find out more. There could be a server-side issue. Contact information is usually included on the landing page of the server, but some public servers also have contact information here:

Thanks! Jen, Galaxy team

ADD COMMENTlink written 12 days ago by Jennifer Hillman Jackson24k

I am sorry but, MultiQC is still not working as desired and now there seems to be a problem with the server. I cant log out of my account (message: Failed to authorize action.)and many analysis programmes are queued but not running (for quite a long time). I am using the main server.

ADD REPLYlink modified 9 days ago • written 9 days ago by rajeev.vikram0
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 108 users visited in the last hour