For the past 24 hours I have been trying to run DEseq2 jobs on the main server usegalaxy.org), but with no success (message reads, 'there is no package getopt'). Other jobs, such as features count, have successfully run. Server status says ok, I also tried rerunning jobs that ran fine 2 days ago, but these also now fail..... is this a temporary problem ?
The public Main Galaxy server at https://usegalaxy.org is presenting with job errors across many tools at this time. We are actively working to correct the issues.
Please follow this ticket for updates: https://biostar.usegalaxy.org/p/26580/
Once the server is corrected, retest your specific issue and comment here in your original post if the problems persist and we can troubleshoot the use case.
Thanks! Jen, Galaxy team