Question: Interactive Environments on Galaxy: data import/export with Galaxy history
0
gravatar for inutano
17 days ago by
inutano0
Tokyo
inutano0 wrote:

I'm using the Jupyter notebook integration in the Galaxy main server, and had an issue on importing/exporting my data with galaxy history. In python2/3 kernel, it is possible to import data from the galaxy history by get() function, and export the file created in Jupyter by put() as described here: https://github.com/bgruening/galaxy-ipython (thanks Björn!)

My question is: Is there a way to get/put data between other type of kernels like R,Julia,bash and the galaxy history? I found I could read the file from the history by specifying the data number in a history as a file name, but couldn't find an easy way to send files back to the history. Currently I'm changing the kernel to python and use put() function, but wondering if I'm missing a better way.

I'm also wondering if there's a document of interactive environments for users, not for admins.

Thanks! Taz

ADD COMMENTlink modified 16 days ago by Jennifer Hillman Jackson24k • written 17 days ago by inutano0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 67 users visited in the last hour