Question: Synteny
gravatar for Claudio Casola
10.4 years ago by
Claudio Casola20 wrote:
Hello, I found Galaxy extremely helpful in the past months and I have an issue that could again be solved using your wonderful platform. I am playing with a bunch of sequences (genome coordinates) from the human genomes that I obtained from some blast searches. I would like to see if these exact sequences are shared by (in synteny with) chimp, orang and macaque. I got MAF blocks from Galaxy and played with them, but I don't see an easy solution. It would be great if you have some suggestion about how to work with synteny using Galaxy, if possible. Thanks a lot! Claudio Casola Postdoctoral fellow, Hahn Lab Department of Biology 1001 East Third Street Bloomington, IN 47405-3700 Indiana University 812-856-7016
galaxy • 828 views
ADD COMMENTlink modified 10.3 years ago by Anton Nekrutenko1.7k • written 10.4 years ago by Claudio Casola20
gravatar for Anton Nekrutenko
10.3 years ago by
Penn State
Anton Nekrutenko1.7k wrote:
Claudio: Let me clarify. Do you want to know if the extracted MAF blocks correlate with the synteny map of a given region? Thanks, anton galaxy team Anton Nekrutenko Asst. Professor Department of Biochemistry and Molecular Biology Center for Comparative Genomics and Bioinformatics Penn State University 814.865.4752
ADD COMMENTlink written 10.3 years ago by Anton Nekrutenko1.7k
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