8 months ago by
I am not able to reproduce this error with an earlier version of the tool, but the most recent version could have a bug. I will do some testing and create an issue report against the tool if I can reproduce this with the current
Galaxy release 17.09 and
Bowtie2 126.96.36.199. More feedback about that once done.
If you have time, please reply with the Galaxy release you are using (
17.09? Local or Docker or Cloudman?) and the Bowtie2 tool version (
188.8.131.52?) to aid with testing.
Short-term workaround: use
Bowtie2 184.108.40.206 as this function is known to work with
Galaxy release 17.09.
Galaxy Main does not have the most current version (
220.127.116.11) installed yet. A ticket to update the server has been created here and includes notes about the potential bug: https://biostar.usegalaxy.org/p/26384/
Thanks! Jen, Galaxy team