Question: problem for run.sh in galaxy
0
gravatar for enginyol
9 months ago by
enginyol0
enginyol0 wrote:

I am trying to run galaxy in local however I got these message. PLS help

File "./scripts/paster.py", line 27, in <module> serve.run() File "/home/slyter/galaxy-dist/lib/galaxy/util/pastescript/serve.py", line 1061, in run invoke(command, command_name, options, args[1:]) File "/home/slyter/galaxy-dist/lib/galaxy/util/pastescript/serve.py", line 1067, in invoke exit_code = runner.run(args) File "/home/slyter/galaxy-dist/lib/galaxy/util/pastescript/serve.py", line 223, in run result = self.command() File "/home/slyter/galaxy-dist/lib/galaxy/util/pastescript/serve.py", line 673, in command serve() File "/home/slyter/galaxy-dist/lib/galaxy/util/pastescript/serve.py", line 650, in serve server(app) File "/home/slyter/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line 237, in server_wrapper *context.local_conf) File "/home/slyter/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line 97, in fix_call val = callable(args, *kw) File "/home/slyter/galaxy-dist/.venv/local/lib/python2.7/site-packages/paste/httpserver.py", line 1361, in server_runner serve(wsgi_app, *kwargs) File "/home/slyter/galaxy-dist/.venv/local/lib/python2.7/site-packages/paste/httpserver.py", line 1310, in serve request_queue_size=request_queue_size) File "/home/slyter/galaxy-dist/.venv/local/lib/python2.7/site-packages/paste/httpserver.py", line 1153, in __init__ request_queue_size=request_queue_size) File "/home/slyter/galaxy-dist/.venv/local/lib/python2.7/site-packages/paste/httpserver.py", line 1132, in __init__ request_queue_size=request_queue_size) File "/home/slyter/galaxy-dist/.venv/local/lib/python2.7/site-packages/paste/httpserver.py", line 345, in __init__ HTTPServer.__init__(self, server_address, RequestHandlerClass) File "/usr/lib/python2.7/SocketServer.py", line 419, in __init__ self.server_bind() File "/usr/lib/python2.7/BaseHTTPServer.py", line 108, in server_bind SocketServer.TCPServer.server_bind(self) File "/usr/lib/python2.7/SocketServer.py", line 430, in server_bind self.socket.bind(self.server_address) File "/usr/lib/python2.7/socket.py", line 224, in meth return getattr(self._sock,name)(*args)

socket.error: [Errno 98] Address already in use

galaxy.jobs.handler INFO 2018-01-19 12:24:57,203 sending stop signal to worker thread

galaxy.jobs.handler INFO 2018-01-19 12:24:57,203 job handler queue stopped

galaxy.jobs.runners INFO 2018-01-19 12:24:57,203 LocalRunner: Sending stop signal to 5 worker threads

galaxy.jobs.handler INFO 2018-01-19 12:24:57,203 sending stop signal to worker thread

galaxy.jobs.handler INFO 2018-01-19 12:24:57,204 job handler stop queue stopped

galaxy • 313 views
ADD COMMENTlink modified 9 months ago by Hotz, Hans-Rudolf1.8k • written 9 months ago by enginyol0
0
gravatar for Hotz, Hans-Rudolf
9 months ago by
Switzerland
Hotz, Hans-Rudolf1.8k wrote:

Hi

"socket.error: [Errno 98] Address already in use" is the key in this error message.

  • are you sure, Galaxy is not already running? make sure, you kill it before you execute run.sh again

  • or is there another 'service' running on this port? you might need to change the port number in the galaxy.ini file

Regards, Hans-Rudolf

ADD COMMENTlink written 9 months ago by Hotz, Hans-Rudolf1.8k
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