Question: problem for in galaxy
gravatar for enginyol
6 months ago by
enginyol0 wrote:

I am trying to run galaxy in local however I got these message. PLS help

File "./scripts/", line 27, in <module> File "/home/slyter/galaxy-dist/lib/galaxy/util/pastescript/", line 1061, in run invoke(command, command_name, options, args[1:]) File "/home/slyter/galaxy-dist/lib/galaxy/util/pastescript/", line 1067, in invoke exit_code = File "/home/slyter/galaxy-dist/lib/galaxy/util/pastescript/", line 223, in run result = self.command() File "/home/slyter/galaxy-dist/lib/galaxy/util/pastescript/", line 673, in command serve() File "/home/slyter/galaxy-dist/lib/galaxy/util/pastescript/", line 650, in serve server(app) File "/home/slyter/galaxy-dist/lib/galaxy/util/pastescript/", line 237, in server_wrapper *context.local_conf) File "/home/slyter/galaxy-dist/lib/galaxy/util/pastescript/", line 97, in fix_call val = callable(args, *kw) File "/home/slyter/galaxy-dist/.venv/local/lib/python2.7/site-packages/paste/", line 1361, in server_runner serve(wsgi_app, *kwargs) File "/home/slyter/galaxy-dist/.venv/local/lib/python2.7/site-packages/paste/", line 1310, in serve request_queue_size=request_queue_size) File "/home/slyter/galaxy-dist/.venv/local/lib/python2.7/site-packages/paste/", line 1153, in __init__ request_queue_size=request_queue_size) File "/home/slyter/galaxy-dist/.venv/local/lib/python2.7/site-packages/paste/", line 1132, in __init__ request_queue_size=request_queue_size) File "/home/slyter/galaxy-dist/.venv/local/lib/python2.7/site-packages/paste/", line 345, in __init__ HTTPServer.__init__(self, server_address, RequestHandlerClass) File "/usr/lib/python2.7/", line 419, in __init__ self.server_bind() File "/usr/lib/python2.7/", line 108, in server_bind SocketServer.TCPServer.server_bind(self) File "/usr/lib/python2.7/", line 430, in server_bind self.socket.bind(self.server_address) File "/usr/lib/python2.7/", line 224, in meth return getattr(self._sock,name)(*args)

socket.error: [Errno 98] Address already in use INFO 2018-01-19 12:24:57,203 sending stop signal to worker thread INFO 2018-01-19 12:24:57,203 job handler queue stopped INFO 2018-01-19 12:24:57,203 LocalRunner: Sending stop signal to 5 worker threads INFO 2018-01-19 12:24:57,203 sending stop signal to worker thread INFO 2018-01-19 12:24:57,204 job handler stop queue stopped

galaxy • 247 views
ADD COMMENTlink modified 6 months ago by Hotz, Hans-Rudolf1.8k • written 6 months ago by enginyol0
gravatar for Hotz, Hans-Rudolf
6 months ago by
Hotz, Hans-Rudolf1.8k wrote:


"socket.error: [Errno 98] Address already in use" is the key in this error message.

  • are you sure, Galaxy is not already running? make sure, you kill it before you execute again

  • or is there another 'service' running on this port? you might need to change the port number in the galaxy.ini file

Regards, Hans-Rudolf

ADD COMMENTlink written 6 months ago by Hotz, Hans-Rudolf1.8k
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