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• planemo test --install_galaxy error
  Hi, I am trying to wrapping a tool for Galaxy. I made a simple xml file with planemo and plan...
• Very slow start up of local Galaxy instance
  Hi all, yesterday I have encountered a problem of a very slow (several minutes) start-up of a lo...
• RSEM "Unable to finish job" but output data seem to be OK
  Hi there I am working on a local instance of Galaxy constructed from the docker image galaxy-sta...
• Incorrect dependencies used during job run
  Galaxy v17.09 Local install. After installation of samtools_sort which installed samtools 1.3.1 ...
• Error with Torque/drmaa
  Dear all, I followed the instructions at https://wiki.galaxyproject.org/Events/GCC2014/TrainingD...
• Slurm Drmaa configuration for Galaxy
  Hello, I have followed the below links to configure Slurm for Galaxy. https://biostar.usegalaxy....
• galaxy setting problem on network
  I have problem on the connection from another computer on my galaxy server   alaxy.sample_trac...
• TS dependencies install with conda doesn't work on galaxy Docker
  Hi there I created a Docker image of a Galaxy instance with some tools installed from the toolsh...
• Issue "Conda dependency seemingly installed but failed to build job environment." after installing tools
  > I just installed some tools on a local galaxy instance, and soon after > I received the e...
• Uploading mgf files throws error (Galaxy-P workflow)
  Dear group, uploading an mgf formatted file results in the error below and the file is not uploa...
• Strange Behavior With Job-Queue
  Hello, On a local galaxy server, I've got into a strange situation: Several jobs are marked as "...
• Personalised tool not running in local galaxy (always yellow but not sending command)
  Hi, I am creating a wrapper to run a personalised tool in my local galaxy installation. I tested...
• Running tests failed sending jobs to PBS
  Good morning, We are trying to deploy Galaxy for our researchers and we have quite a few errors ...
• Planemo tutorial test - "Failed to resolve dependency" "Error loading a set of Dynamic Display Application links"
  I have been trying to follow the tutorial ["The Basics" under "Building Galaxy Tools ... using P...
• Galaxy - SGE, job terminated but failed
  Hi everyone, I come back to you with another problem  : I tried to set Galaxy to our cluster. I ...
• Issues with setting up Trackster/Visulization on local Galaxy
  Hi everyone, I am trying to set up a local instance of Galaxy, including the Visulization using ...
• Cuffdiff 2.2.1.5 error with cummeRbund SQlite. "Fatal error: Exit code 1 () -- use version 2.2.1.3 instead
  Hi, so as a disclaimer, I am very new to RNA seq analysis. I received the following error while r...
• TopHat error only on one dataset?
  Hi all, I've run my RNA-Seq data through tophat for the rn5 genome and it worked as expected. I...
• MACS returns an error
  Hi again! I am trying to run MACS on my treatment and control, but it comes back with an error. I...