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Question: Can I submit the next step when this step is still processing (yellow)
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gravatar for 18Kbeyond
11 months ago by
18Kbeyond • 20
New York
18Kbeyond • 20 wrote:

Hi. Is it safe to submit the next step B whose input is the output of A when this step A is still processing (file in yellow) or even waiting (file in grey)?

I want to do this because I want to submit jobs all in once so that galaxy can automatically starts the next step B when A is finished, so that I don't have to keep watching for A to finish running (file in green) then start the next step B.
yellow workflow • 335 views
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modified 10 months ago • written 11 months ago by 18Kbeyond • 20

If you have already executed your analysis steps (A history). You can build a workflow from this one and then just run it with your new inputs. Each step needing an input should wait for it.

ADD REPLY • link written 11 months ago by bensellak • 0
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gravatar for Martin Čech
11 months ago by
Martin Čech ♦♦ 4.9k
United States
Martin Čech ♦♦ 4.9k wrote:

The way this is done is called a workflow and you can reach the interface to build them from the top Galaxy menu.

Read more here: https://galaxyproject.org/learn/advanced-workflow/

edit: it is also safe to do it manually as you described, the workflow is a superior solution though
ADD COMMENT • link modified 11 months ago • written 11 months ago by Martin Čech ♦♦ 4.9k
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gravatar for 18Kbeyond
10 months ago by
18Kbeyond • 20
New York
18Kbeyond • 20 wrote:

Found it here https://galaxyproject.org/learn/advanced-workflow/extract/ Thanks guys!
ADD COMMENT • link written 10 months ago by 18Kbeyond • 20
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