Hi guys -
I'm running a local instance of galaxy (17.09) and using bcftools_stats to create some summary statistics on multiple vcf files. This results in a text file with the info that is automatically plotted using "plot-vcfstats" to create a pdf with summary charts/graphs. The job runs successfully however, when I click to view the pdf it says "failed to load pdf document". There is also no download button for the pdf and I can't find it in my galaxy files from the command prompt using "sudo find . -name". Is galaxy treating it like a temp file? I can, however, get to the text file. Using bcftools_stats with the option to create a pdf leads to the creation of 2 jobs, and it seems the one responsible for generating the pdf is having some sort of issue even though it claims to have ran just fine.
In addition, when I run the tools from the command line, the pdf is created normally.