Keeping Aditional Data In The Aachanges Tool

Question: Keeping Aditional Data In The Aachanges Tool

7.5 years ago by

Dear Galaxy staff, I have recently started using your tool and it has been really helpful, thank you! When using Human Genome Variation, aaChanges, I would like to keep some extra lines in the output file from either of the input files. In the tool description it says I should be able to keep them: "...chromosome, start, and end position as well as the SNP. The SNP can be given using ambiguous-nucleotide symbols or a list of two to four alleles separated by '/'. *Any other columns in the first input file will not be used but will be kept for the output*. The second input file contains..." However, I haven't found a way of actually have them in the output file. What am I missing/doing incorrectly? What I've been trying to keep by the way is rs IDs or Ensembl gene IDs. Thank you in advance for your answer. Kind regards, Ximena

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modified 7.5 years ago by Jennifer Hillman Jackson ♦ 25k • written 7.5 years ago by Ximena Bonilla • 10

7.5 years ago by

Jennifer Hillman Jackson ♦ 25k

United States

Jennifer Hillman Jackson ♦ 25k wrote:

Hello Ximena, Thank you for bring this to our attention, we are able to duplicate these same results. A "name" attribute (such as an rs number) is an important data tag and we would like to be able to have the tool retain this data if possible. Our development team is currently investigating and we will get back to you as soon as possible. Again, we appreciate your feedback and thank you for your patience while we review potential remedies, Best, Jen Galaxy team -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org

ADD COMMENT • link written 7.5 years ago by Jennifer Hillman Jackson ♦ 25k

Hi Ximena, I have placed this request into a ticket for easier tracking: https://bitbucket.org/galaxy/galaxy-central/issue/637 Thanks again for the suggestion, Jen Galaxy team -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/Support

ADD REPLY • link written 7.3 years ago by Jennifer Hillman Jackson ♦ 25k

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