Question: DeSEQ2 not running
0
gravatar for dc592
12 months ago by
dc5920
dc5920 wrote:

Hello, my DeSEQ2 doesn't start to run. It is grey since yesterday morning is there any problem? Best wishes M.

rna-seq software error • 341 views
ADD COMMENTlink modified 12 months ago by Jennifer Hillman Jackson25k • written 12 months ago by dc5920
0
gravatar for Jennifer Hillman Jackson
12 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

The clusters have been busy the last few days. Allow any queued jobs to stay queued and avoid deleting and restarting - doing this removes your original job from the queue and places the new job back at the end, extending wait time.

https://galaxyproject.org/support/ >> Datasets and how jobs execute

Thanks! Jen, Galaxy team

ADD COMMENTlink written 12 months ago by Jennifer Hillman Jackson25k

Update: I checked your jobs to make sure more was not going on.

Two things:

1) It looks like the original jobs were already deleted and new ones were started today.

2) The input collection of feature_counts results in dataset 647 is odd. Two of the elements were deleted? This could cause problems - both technical and scientific. You might need to correct and rerun that job first, then downstream tools like DeSeq2.

ADD REPLYlink modified 12 months ago • written 12 months ago by Jennifer Hillman Jackson25k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 168 users visited in the last hour