Question: DeSEQ2 not running
0
gravatar for dc592
11 months ago by
dc5920
dc5920 wrote:

Hello, my DeSEQ2 doesn't start to run. It is grey since yesterday morning is there any problem? Best wishes M.

rna-seq software error • 294 views
ADD COMMENTlink modified 11 months ago by Jennifer Hillman Jackson25k • written 11 months ago by dc5920
0
gravatar for Jennifer Hillman Jackson
11 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

The clusters have been busy the last few days. Allow any queued jobs to stay queued and avoid deleting and restarting - doing this removes your original job from the queue and places the new job back at the end, extending wait time.

https://galaxyproject.org/support/ >> Datasets and how jobs execute

Thanks! Jen, Galaxy team

ADD COMMENTlink written 11 months ago by Jennifer Hillman Jackson25k

Update: I checked your jobs to make sure more was not going on.

Two things:

1) It looks like the original jobs were already deleted and new ones were started today.

2) The input collection of feature_counts results in dataset 647 is odd. Two of the elements were deleted? This could cause problems - both technical and scientific. You might need to correct and rerun that job first, then downstream tools like DeSeq2.

ADD REPLYlink modified 11 months ago • written 11 months ago by Jennifer Hillman Jackson25k
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