Question: DeSEQ2 not running
gravatar for dc592
9 months ago by
dc5920 wrote:

Hello, my DeSEQ2 doesn't start to run. It is grey since yesterday morning is there any problem? Best wishes M.

rna-seq software error • 236 views
ADD COMMENTlink modified 9 months ago by Jennifer Hillman Jackson25k • written 9 months ago by dc5920
gravatar for Jennifer Hillman Jackson
9 months ago by
United States
Jennifer Hillman Jackson25k wrote:


The clusters have been busy the last few days. Allow any queued jobs to stay queued and avoid deleting and restarting - doing this removes your original job from the queue and places the new job back at the end, extending wait time. >> Datasets and how jobs execute

Thanks! Jen, Galaxy team

ADD COMMENTlink written 9 months ago by Jennifer Hillman Jackson25k

Update: I checked your jobs to make sure more was not going on.

Two things:

1) It looks like the original jobs were already deleted and new ones were started today.

2) The input collection of feature_counts results in dataset 647 is odd. Two of the elements were deleted? This could cause problems - both technical and scientific. You might need to correct and rerun that job first, then downstream tools like DeSeq2.

ADD REPLYlink modified 9 months ago • written 9 months ago by Jennifer Hillman Jackson25k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 126 users visited in the last hour