Question: co-variance in DESeq2
gravatar for dc592
5 weeks ago by
dc5920 wrote:

Hello all, I have got some RNAseq results back from a group of patients and a group of controls. I ran DESeq2 to see which genes where significantly differential expressed. When I looked at the PCA plots generated in the DESeq2 on galaxy it didn't group perfectly and I was wondering if it is possible to include Co-Variants like ages ect in the analysis? any ideas???

rna-seq • 64 views
ADD COMMENTlink modified 5 weeks ago by Jennifer Hillman Jackson23k • written 5 weeks ago by dc5920
gravatar for Jennifer Hillman Jackson
5 weeks ago by
United States
Jennifer Hillman Jackson23k wrote:


For covariant analysis in Deseq2, multiple top-level factors can be specified and populated with sub-factor levels and counts.


Hope that helps! Jen, Galaxy team

ADD COMMENTlink written 5 weeks ago by Jennifer Hillman Jackson23k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 91 users visited in the last hour