Question: read representation using trinity
0
gravatar for majeedaasim
7 months ago by
majeedaasim0 wrote:

Is there any way to analyse the trinity assembly for RNA seq read representation and Transcriptome Contig Nx and ExN50 stats in galaxy.

thanks

ADD COMMENTlink modified 7 months ago by Jennifer Hillman Jackson25k • written 7 months ago by majeedaasim0
0
gravatar for Jennifer Hillman Jackson
7 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

Try the tool Quast. This is available at https://usegalaxy.org, the Tool Shed for a local Galaxy use, and at a few other public servers.

Tutorial: https://galaxyproject.github.io/training-material/topics/assembly/tutorials/unicycler-assembly/tutorial.html

Thanks! Jen, Galaxy team

ADD COMMENTlink written 7 months ago by Jennifer Hillman Jackson25k
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