Question: read representation using trinity
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gravatar for majeedaasim
10 weeks ago by
majeedaasim0 wrote:

Is there any way to analyse the trinity assembly for RNA seq read representation and Transcriptome Contig Nx and ExN50 stats in galaxy.

thanks

ADD COMMENTlink modified 10 weeks ago by Jennifer Hillman Jackson23k • written 10 weeks ago by majeedaasim0
0
gravatar for Jennifer Hillman Jackson
10 weeks ago by
United States
Jennifer Hillman Jackson23k wrote:

Hello,

Try the tool Quast. This is available at https://usegalaxy.org, the Tool Shed for a local Galaxy use, and at a few other public servers.

Tutorial: https://galaxyproject.github.io/training-material/topics/assembly/tutorials/unicycler-assembly/tutorial.html

Thanks! Jen, Galaxy team

ADD COMMENTlink written 10 weeks ago by Jennifer Hillman Jackson23k
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