Question: Query in uploading data in stringtie
gravatar for sinha.puja
7 months ago by
sinha.puja0 wrote:

When I am using stringtie in galaxy, the one option is Reference annotation to use for guiding the assembly process so how to upload gtf reference annotation in the column. However I have downloaded the human gtf file from ensemble and it also showed in my history in galaxy but the column in stringtie shows no gtf data set available.

galaxy • 154 views
ADD COMMENTlink modified 7 months ago by Jennifer Hillman Jackson24k • written 7 months ago by sinha.puja0
gravatar for Jennifer Hillman Jackson
7 months ago by
United States
Jennifer Hillman Jackson24k wrote:


Try assigning the datatype gtf to the reference annotation dataset in your history. This is how:

Thanks! Jen, Galaxy team

ADD COMMENTlink written 7 months ago by Jennifer Hillman Jackson24k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 90 users visited in the last hour