Question: Import docker containers on a galaxy instance
0
gravatar for niras.94
5 months ago by
niras.9430
niras.9430 wrote:

Hello,

I have a question about Galaxy and docker integration. How you can import a docker image to a Galaxy instance in order to work together?

Thanks a lot!

galaxy docker • 156 views
ADD COMMENTlink modified 4 months ago • written 5 months ago by niras.9430
0
gravatar for Bjoern Gruening
4 months ago by
Bjoern Gruening4.8k
Germany
Bjoern Gruening4.8k wrote:

Hi,

if you have Galaxy configured to use Docker and your tools do support BioContainers, then Galaxy should be able to download images for you on-the-fly as needed.

Cheers,

Bjoern

ADD COMMENTlink written 4 months ago by Bjoern Gruening4.8k
0
gravatar for niras.94
4 months ago by
niras.9430
niras.9430 wrote:

Thanks for your answer. But if i want to install an image that si not supported by BioContainers i wiil have to write my own .xml file. Am i right?

Also i would appreciate it a lot if you could write a complete guide on how to install Jupyter on my Galaxy instance.

Thanks again,

Dimitris

ADD COMMENTlink written 4 months ago by niras.9430

Strictly yes, but I would recommend you to create a BioContainer, by submitting a recipe to BioConda.

ADD REPLYlink written 4 months ago by Bjoern Gruening4.8k
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