I'm using Trimmomatic to trimming paired end reads. When I set "Single-end or paired-end reads?" to Paired-end (two separate input files), it recognizes files only for Input FASTQ file (R2/second of pair). Therefor, I can choose any fastq files for R2/second pair, on the other hand I could not choose no files for R1/first pair. How do I do to fix the problem??
Question: Help! I'm using trimmomatic in Galaxy, but it doesn't recognize a part of input dataset.
6 months ago by
redgreen • 10
redgreen • 10 wrote:
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5 months ago by
Jennifer Hillman Jackson ♦ 23k
Jennifer Hillman Jackson ♦ 23k wrote:
The dataset "datatype" probably needs to be both confirmed to the in
fastqsanger format then have that assigned.
- Support Hub, Troubleshooting https://galaxyproject.org/support/#troubleshooting
- The tool I'm using does not recognize any input datasets. Why? https://galaxyproject.org/support/datatypes-and-tools/
- How to format fastq data for tools that require .fastqsanger format? https://galaxyproject.org/support/fastqsanger/
Thanks, Jen, Galaxy team
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