Question: Local Project Architecture from Galaxy workflow
gravatar for dktanwar
17 months ago by
dktanwar0 wrote:

Is it possible to create a project directory from a workflow?

To do: If I have following steps to perform: Alignment, Marking Duplicates, Peak calling.

Desired output: A folder which contains a subfolder with all steps and create a local directory after running a workflow (like this):

                   |- Alignment
                        - results
                   |- Marked_Duplicates
                        - results
                   |- Peak_calling
                        - results
galaxy • 390 views
ADD COMMENTlink modified 17 months ago by Devon Ryan1.9k • written 17 months ago by dktanwar0
gravatar for Devon Ryan
17 months ago by
Devon Ryan1.9k
Devon Ryan1.9k wrote:

Simon Gladman had a nice poster at GCC 2017 presenting a script using fuse to mount Galaxy histories locally. The idea would be to have your workflow write to a new history and then use his script locally to have direct access to it. I don't know how that script is treating dataset collections, but if it's not currently treating them as subdirectories then I imagine that that's just a pull request away :)

ADD COMMENTlink written 17 months ago by Devon Ryan1.9k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 148 users visited in the last hour