Local Project Architecture from Galaxy workflow

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Question: Local Project Architecture from Galaxy workflow

17 months ago by

dktanwar • 0

dktanwar • 0 wrote:

Is it possible to create a project directory from a workflow?

To do: If I have following steps to perform: Alignment, Marking Duplicates, Peak calling.

Desired output: A folder which contains a subfolder with all steps and create a local directory after running a workflow (like this):

           Project-|
                   |- Alignment
                        - results
                   |- Marked_Duplicates
                        - results
                   |- Peak_calling
                        - results

galaxy • 390 views

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modified 17 months ago by Devon Ryan • 1.9k • written 17 months ago by dktanwar • 0

17 months ago by

Devon Ryan • 1.9k

Germany

Devon Ryan • 1.9k wrote:

Simon Gladman had a nice poster at GCC 2017 presenting a script using fuse to mount Galaxy histories locally. The idea would be to have your workflow write to a new history and then use his galaxy-fuse.py script locally to have direct access to it. I don't know how that script is treating dataset collections, but if it's not currently treating them as subdirectories then I imagine that that's just a pull request away :)

ADD COMMENT • link written 17 months ago by Devon Ryan • 1.9k

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