Hello, I have been trying bioconda for R-tool dependencies for few of packages It is work perfectly but one of my tool need rentrez package (I've tried entrez-direct but I think It is something bit different). What should I do in that case? I've normally use this website for dependency https://bioconda.github.io/recipes
Hi,
you could try to contribute your own conda package. We have written some documentation here: https://bioconda.github.io/contributing.html
For normal cran R packages have a look at https://bioconda.github.io/guidelines.html#r-cran. Hope that gets you started!
Cheers, Bjoern
Hi, I contribute r-rentrez on bioconda and received fatal error on galaxy: Exit code 127 () /srv/galaxy/server/database/jobs/006/6814/conda-env/lib/R/bin/exec/R: symbol lookup error: /srv/galaxy/server/database/jobs/006/6814/conda-env/lib/R/bin/exec/../../lib/../../libreadline.so.6: undefined symbol: PC
In addition I want to use existing bioconductor-minfi package with mine bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 . Galaxy install only minfi package and return error again 'cannot load annotation package IlluminaHumanMethylation450kanno.ilmn12.hg19'.
Can someone help me with this? (I've tried to install both on my computer and everything works fine)
