Question: Toolshed tool installed but missing
0
gravatar for i-guigon
6 months ago by
i-guigon70
i-guigon70 wrote:

Hello everyone

I've created a Docker image which contains a Galaxy + some tools installed from the toolshed (main) and some manually installed tools. Everything works fine.

I've pulled my docker image on several virtual machines (all are Ubuntu 16) (we'll need this for a training). My 3 first VMs are OK but on the last VMs I created, the tool CEAS (installed from the toolshed) does not appear in the tool panel.

The docker image is the same on all my VMs, all VMs have the same config, on all VMs the file "shed_tool_conf.xml" is the same and CEAS is present, but on my last VMs in the file "integrated_tool_panel.xml" the section "CEAS" is empty. It contains :

<section id="ceas" name="CEAS" version="">
</section>

instead of

<section id="ceas" name="CEAS" version="">
    <tool id="toolshed.g2.bx.psu.edu/repos/pjbriggs/ceas/ceas/1.0.2-3" />
</section>

on the "good" VMs.

I've stopped and started a container from this Docker image several times without success. I've deleted the VM and started a new one several times still without success. I've run a docker container in interactive mode and checked the log files but I couldn't find a clue about a problem with CEAS.

I have other tools installed from the toolshed, they work fine.

If you have any idea of what the problem might be please let me know.

toolshed ceas galaxy docker • 134 views
ADD COMMENTlink written 6 months ago by i-guigon70

Any luck in solving this isue?

ADD REPLYlink written 7 days ago by Coryzaa10

Hello. It was probably a temporary problem with CEAS itself. Back then when I tried to install CEAS on another Galaxy instance with the admin panel, it failed. And right now I just created a Galaxy instance from my Docker container and CEAS is present.

ADD REPLYlink written 7 days ago by i-guigon70
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