I have been using tophat to quantify sequences in my RNAseq analysis along this year.. But today, Tophat is not under the RNA analysis tools in Galaxy... Does sb know what happened w/ tophat? Is it in maintainance? Is it going to be included soon? Or.. if not, what other tool should I use to keep the consistency of my results.. I mean, some of my results are Tophat outputs..
Thanks so much!