Question: Bowtie indexing error (local Galaxy)
12 months ago by
vebaev • 130
vebaev • 130 wrote:
I'm trying to index human genome 38 (fasta downloaded from GENCODE) but after hours working bowtie indexing gives error:
Traceback (most recent call last): File "/galaxy-central/lib/galaxy/jobs/runners/__init__.py", line 611, in finish_job job_state.job_wrapper.finish( stdout, stderr, exit_code ) File "/galaxy-central/lib/galaxy/jobs/__init__.py", line 1397, in finish self.tool.exec_after_process( self.queue.app, inp_data, out_data, param_dict, job=job ) File "/galaxy-central/lib/galaxy/tools/__init__.py", line 2201, in exec_after_process assert data_manager is not None, "Invalid data manager (%s) requested. It may have been removed before the job completed." % ( data_manager_id ) AssertionError: Invalid data manager (bowtie_index_builder_data_manager) requested. It may have been removed before the job completed.
Tool execution generated the following error message:
Unable to finish job
I have indexed tomato genome (which was smaller) but with no problem?
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