Question: htseq-count failed with error no exon found
1
gravatar for sapna01t
9 months ago by
sapna01t30
sapna01t30 wrote:

I am having trouble with htseq-count. My gff file i.e. brassica juncea .gff file does not contain exon feature. How to run htseq? it is giving me error

htseq-count htseq • 343 views
ADD COMMENTlink modified 12 weeks ago by aadishail0 • written 9 months ago by sapna01t30

The error message is cant find the gene_id/gene_name

ADD REPLYlink written 12 weeks ago by aadishail0
0
gravatar for Devon Ryan
9 months ago by
Devon Ryan1.8k
Germany
Devon Ryan1.8k wrote:

I've replied to this on the main biostars site.

ADD COMMENTlink written 9 months ago by Devon Ryan1.8k

Hi,

I am also having trouble using gff3 file of salmo salar from ncbi. HTSeq gives error all the time kindly advise how can I fix it

ADD REPLYlink written 3 months ago by aadishail0

What's the error message?

ADD REPLYlink written 3 months ago by Devon Ryan1.8k
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