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Question: Galaxy for Proteomics Galaxy-P
0
gravatar for Maha-Yerramilli
2.0 years ago by
Maha-Yerramilli • 0
Maha-Yerramilli • 0 wrote:

How can I create Proteomics workflow in Galaxy?

Galaxy-P has option to create. I don't see the tools here

Thank you Maha
proteomics • 662 views
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modified 2.0 years ago by Mo Heydarian ♦ 830 • written 2.0 years ago by Maha-Yerramilli • 0
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gravatar for Mo Heydarian
2.0 years ago by
Mo Heydarian ♦ 830
United States
Mo Heydarian ♦ 830 wrote:

Hello,

Are you using useGalaxy.org? The main public instance of Galaxy useGalaxy.org) does not host proteomics tools, though, setting up a local Galaxy instance or Cloudman instance will allow you to install proteomics related tools from the toolshed.

If your goal is to simply create a workflow with proteomics tools, you can use https://usegalaxyp.org, which is an instance established by the Galaxy-P group at the University of Minnesota for users to create and share workflows for proteomics analysis.

Hope this helps! Please feel free to respond with any questions.

Thanks for using Galaxy!

Cheers,

Mo Heydarian, Galaxy Team
ADD COMMENT • link written 2.0 years ago by Mo Heydarian ♦ 830

Thank you and I will try it out…

From: Mo Heydarian on Galaxy Biostar [mailto:notifications@biostars.org] Sent: Sunday, November 13, 2016 12:54 AM To: Yerramilli, Maha Maha-Yerramilli@idexx.com Subject: [galaxy-biostar] Galaxy for Proteomics Galaxy-P

Activity on a post you are following on Galaxy Biostarhttps://urldefense.proofpoint.com/v2/url?u=http-3A__biostar.usegalaxy.org&d=DgMCaQ&c=2do6VJGs3LvEOe4OFFM1bA&r=VV_wM38xFthAivdYn8CrLp1VV_CYKjNTOidk17HRFuQ&m=2l8g31FmUOqeDZtpS6XkM6U1pOkAJAnUooMH_e3FlZI&s=9cd_1DXtfghdddey19_Y9NtYrH_N9304vXZIWE2wong&e=

User Mo Heydarianhttps://urldefense.proofpoint.com/v2/url?u=http-3A__biostar.usegalaxy.org_u_945_&d=DgMCaQ&c=2do6VJGs3LvEOe4OFFM1bA&r=VV_wM38xFthAivdYn8CrLp1VV_CYKjNTOidk17HRFuQ&m=2l8g31FmUOqeDZtpS6XkM6U1pOkAJAnUooMH_e3FlZI&s=jRr-0-3b59MyebECXuwU_0L12AVQmXffn9WeqprBW6Q&e= wrote Answer: Galaxy for Proteomics Galaxy-Phttps://urldefense.proofpoint.com/v2/url?u=http-3A__biostar.usegalaxy.org_p_20500_-2320503&d=DgMCaQ&c=2do6VJGs3LvEOe4OFFM1bA&r=VV_wM38xFthAivdYn8CrLp1VV_CYKjNTOidk17HRFuQ&m=2l8g31FmUOqeDZtpS6XkM6U1pOkAJAnUooMH_e3FlZI&s=xiXyYIaR2bl9KKtfSkC_tsquOqNB3_k2kwY7Ocn1mSg&e=:

Hello,

Are you using useGalaxy.org? The main public instance of Galaxy useGalaxy.org) does not host proteomics tools, though, setting up a local Galaxy instance or Cloudman instance will allow you to install proteomics related tools from the toolshed.

If your goal is to simply create a workflow with proteomics tools, you can use https://usegalaxyp.orghttps://urldefense.proofpoint.com/v2/url?u=https-3A__usegalaxyp.org&d=DgMCaQ&c=2do6VJGs3LvEOe4OFFM1bA&r=VV_wM38xFthAivdYn8CrLp1VV_CYKjNTOidk17HRFuQ&m=2l8g31FmUOqeDZtpS6XkM6U1pOkAJAnUooMH_e3FlZI&s=QGNmBSqlZYTIg38ppbQVIbUAksYt4BRiYQvctrGUYrM&e=, which is an instance established by the Galaxy-P group at the University of Minnesota for users to create and share workflows for proteomics analysis.

Hope this helps! Please feel free to respond with any questions.

Thanks for using Galaxy!

Cheers,

Mo Heydarian, Galaxy Team

ADD REPLY • link written 2.0 years ago by Maha-Yerramilli • 0
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