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Question: what features are counted by 'compute both depth and breadth'?
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gravatar for c.zijlstra
2.1 years ago by
c.zijlstra • 0
c.zijlstra • 0 wrote:

I used the bed tool Compute both depth and breadth of coverage', but it is not clear to me whether output lists number of nucleotides or number of alignments that overlap an interval. Can someone please explain this?

Kind regards, carla
galaxy • 462 views
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modified 2.1 years ago by Jennifer Hillman Jackson ♦ 25k • written 2.1 years ago by c.zijlstra • 0
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gravatar for Jennifer Hillman Jackson
2.1 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

This is the number of alignments and partial alignments combined. Partial alignments are given a score based on coverage of the target interval, as a fraction. The manual explains this in more detail if interested.

Related to: https://biostar.usegalaxy.org/p/20021/

Thanks, Jen, Galaxy team
ADD COMMENT • link written 2.1 years ago by Jennifer Hillman Jackson ♦ 25k
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