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• Fastq Groomer
  Hi all, Fastq groomer has Solexa or Illumina 1.3+ as an input quality format. I asked at the seq...
• Upload fastq to 'Data Libraries' Using Bioblend Python library
  Hello , I am a Developer from INDIA , I am using the galaxy API to create a library,upload fast f...
• Groomer vs datatype
  Hello all, I've a naive question: fastq file have to be modified to fastqsanger format before run...
• FASTQ groomer - problem with dataset?
  Hello, I started running the FASTQ groomer tool on about 10 datasets in parallel, 2 days ago. A...
• Fastq Groomer And Compute Quality Statistics
  I noticed that for our new Ilumina data (which generate Sanger format) the FastQ groomer output i...
• I cannot upload files from my pc in my new workflow
  I have just made a new workflow in Galaxy in order to convert a FASTQ file to VCF. In "Get Data" ...
• FastQ Groomer Problem - Syntax
  Hi, I have searched all over and I cannot find a solution to this. When I run the FastQ groomer ...
• Is The Result Of Galaxy Tool (E.G. Fastq Groomer) Automatically Saved Somewhere On A Local Linux Server?
  Then I ran FastQ Groomer on some datasets. The results were shown under "History". I am ...
• Workflow to clean data prior to variant call
  Hi,  I would like some advice on the workflow I'm using. 1- I have WGS data from bacteria, I've...
• from_work_dir tags not working in Galaxy output
  Hi,   I've got a problem and I hope you know what I am doing wrong. I'm running/coding a tool t...
• how to combine individual chromosomal wig files into 1 bigwig file.
  I am using Galaxy on a PC.  My peak calling software is a PC based program built into DNAstar.  U...
• Parallel Processing Of Multiple Files On A Multi-Processor Box?
  Hi, I have an RNA-seq study with 6 runs. The output is 6 Illumina fastq files. I would like to...
• fastq convert problem
  Hi. I have a problem using my data on galaxy for proces radtags. First I had to trim my raw data ...
• FastQ groomer is not recognising my data
  Hey, I'm trying to groom a fastQ file using FastQ groomer. No matter what combination of options ...
• fastq splitter problem
  fastq splitter is not working on paired end read for some of my file and produce output file with...
• Regarding A Cuffdiff Output
  Dear galaxy users Hello. I have a quick question about Cuffdiff analysis. I have obtained two SR...
• Downloads of big data
  Dear all, unfortunatelly my fastq files from RNASeq are already very large and become even larger...
• Mapping paired reads to reference genome, variant calling
  I am trying to map a trio of paired-end Illumina reads to a reference genome, then identify polym...
• FastQ files unzip
  Hello I have loaded the zipped file for FastQ analysis. Do I have to unzip it before I run FASTQ...
• Re: Getting Reference Index Files In Local Galaxy Install
  Hi, We have a local install of galaxy and I'm trying to add the reference index files for bwa usi...
• Link files from another disk to my local Galaxy instance
  I was trying to use the tool "Upload files from filesystem paths" to link some .fastq files to my...
• Custom galaxy tool: multiple output files
  This is my first attempt to install a custom tool on galaxy and I'm having some trouble getting *...