Question: Server error while using embedded workflow in page editor
gravatar for fiebig
2.3 years ago by
fiebig30 wrote:

Hi, I want to create a page to illustrate a workflow. I placed some galaxy objects, a history and one workflow. Both paragraphs were placed in the editor. While viewing the page, the history object acted as expected, but for the workflow object I could not use the buttons "Show or hide workflow content", "Show workflow content" and "Go to workflow" After clicking one of them, I got the following Popup Message: "Getting item content failed."


 Internal Server Error Galaxy was unable to successfully complete your request URL: 
File '/galaxy/lib/galaxy/web/framework/middleware/', line 151 in __call__   app_iter = self.application(environ, sr_checker) File '/galaxy/.venv/lib/python2.7/site-packages/paste/', line 85 in __call__   return self.application(environ, start_response) 
File '/galaxy/lib/galaxy/web/framework/middleware/', line 175 in __call__   return environ, start_response ) 
File '/galaxy/.venv/lib/python2.7/site-packages/paste/', line 640 in __call__   return self.application(environ, start_response) 
File '/galaxy/lib/galaxy/web/framework/', line 131 in __call__   return self.handle_request( environ, start_response ) File '/galaxy/lib/galaxy/web/framework/', line 190 in handle_request   body = method( trans, **kwargs ) 
File '/galaxy/lib/galaxy/webapps/galaxy/controllers/', line 255 in display_by_username_and_slug   return self._display( trans, stored_workflow ) 
File '/galaxy/lib/galaxy/webapps/galaxy/controllers/', line 291 in _display   user_item_rating=user_item_rating, ave_item_rating=ave_item_rating, num_ratings=num_ratings ) 
File '/galaxy/lib/galaxy/web/framework/', line 872 in fill_template_mako   return template.render( **data ) 
File '/galaxy/.venv/lib/python2.7/site-packages/mako/', line 445 in render   return runtime._render(self, self.callable_, args, data) 
File '/galaxy/.venv/lib/python2.7/site-packages/mako/', line 829 in _render   **_kwargs_for_callable(callable_, data)) 
File '/galaxy/.venv/lib/python2.7/site-packages/mako/', line 864 in _render_context   _exec_template(inherit, lclcontext, args=args, kwargs=kwargs) 
File '/galaxy/.venv/lib/python2.7/site-packages/mako/', line 890 in _exec_template   callable_(context, *args, **kwargs) File '/galaxy/database/compiled_templates/base/', line 126 in render_body   __M_writer(unicode(self.center_panel())) 
File '/galaxy/database/compiled_templates/', line 180 in render_center_panel   __M_writer(unicode(self.render_content())) 
File '/galaxy/database/compiled_templates/', line 144 in render_render_content   __M_writer(unicode(self.render_item( item, item_data ))) 
File '/galaxy/database/compiled_templates/workflow/', line 105 in render_render_item   __M_writer(unicode(do_inputs( tool.inputs, step.state.inputs, "", step ))) 
File '/galaxy/database/compiled_templates/workflow/', line 78 in do_inputs   return render_do_inputs(context,inputs,values,prefix,step,other_values) 
File '/galaxy/database/compiled_templates/workflow/', line 185 in render_do_inputs   __M_writer(unicode(do_inputs( input.cases[ current_case ].inputs, group_values, new_prefix, step, other_values ))) 
File '/galaxy/database/compiled_templates/workflow/', line 145 in do_inputs   return render_do_inputs(context,inputs,values,prefix,step,other_values) 
File '/galaxy/database/compiled_templates/workflow/', line 201 in render_do_inputs   __M_writer(unicode(row_for_param( input, values[ ], other_values, prefix, step ))) 
File '/galaxy/database/compiled_templates/workflow/', line 143 in row_for_param   return render_row_for_param(context,param,value,other_values,prefix,step) 
File '/galaxy/database/compiled_templates/workflow/', line 265 in render_row_for_param   __M_writer(unicode(cgi.escape( param.value_to_display_text( value, app ) ))) 
File '/usr/lib64/python2.7/', line 1034 in escape   s = s.replace("&", "&") # Must be done first! AttributeError: 'NoneType' object has no attribute 'replace'

Also setting a links to the workflow was not successful.

The workflow is running without any problems and it's available to all users by link and permission. I have tried it with different workflows. Some of the workflows links are working - some not. I can't see a pattern. None of them can be embedded in a galaxy page. Is there any permission or option I forget to change?

I'm working on a local instance, version 16.04


workflow published page • 749 views
ADD COMMENTlink written 2.3 years ago by fiebig30
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