Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: Python2.7 installed galaxy only sees 2.6
0
gravatar for blewettn
2.4 years ago by
blewettn • 10
blewettn • 10 wrote:

ERROR: Your Python version is: 2.6 I have installed python2.7 including additional packages which are said to be important. I am very new to command line and I have been unable to find an answer to how I can point galaxy at python2.7 I can't seem to find the correct syntax to establish the PATH.
software error python • 564 views
ADD COMMENT • link •
modified 2.4 years ago • written 2.4 years ago by blewettn • 10

what does which python output in your terminal?

ADD REPLY • link written 2.4 years ago by Martin Čech ♦♦ 4.9k
0
gravatar for blewettn
2.4 years ago by
blewettn • 10
blewettn • 10 wrote:

It reports python 2.7.6 I should mention I'm running centOS6 on Illumina recommendation for BCL2FASTQ conversion. With centos6 apparently I can't just remove python2.6 and use 2.7 alone.

I'm considering trying BCL2FASTQ in centos7 in virtual environment to see if that works, I'm guessing it will. But not sure if upgrading to centos7 will fix the pythonpath issue.

I had someone install the same packages and create a local galaxy server and had no problems, so I'm guessing it might be an OS issue?

ADD COMMENT • link written 2.4 years ago by blewettn • 10

I can tell you from experience that at least bcl2fastq2 (v2.17) works in centos 7.

ADD REPLY • link written 2.4 years ago by Devon Ryan • 1.9k
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 171 users visited in the last hour