Question: Python2.7 installed galaxy only sees 2.6
0
gravatar for blewettn
2.2 years ago by
blewettn10
blewettn10 wrote:

ERROR: Your Python version is: 2.6 I have installed python2.7 including additional packages which are said to be important. I am very new to command line and I have been unable to find an answer to how I can point galaxy at python2.7 I can't seem to find the correct syntax to establish the PATH.

software error python • 493 views
ADD COMMENTlink modified 2.2 years ago • written 2.2 years ago by blewettn10

what does which python output in your terminal?

ADD REPLYlink written 2.2 years ago by Martin Čech ♦♦ 4.8k
0
gravatar for blewettn
2.2 years ago by
blewettn10
blewettn10 wrote:

It reports python 2.7.6 I should mention I'm running centOS6 on Illumina recommendation for BCL2FASTQ conversion. With centos6 apparently I can't just remove python2.6 and use 2.7 alone.

I'm considering trying BCL2FASTQ in centos7 in virtual environment to see if that works, I'm guessing it will. But not sure if upgrading to centos7 will fix the pythonpath issue.

I had someone install the same packages and create a local galaxy server and had no problems, so I'm guessing it might be an OS issue?

ADD COMMENTlink written 2.2 years ago by blewettn10

I can tell you from experience that at least bcl2fastq2 (v2.17) works in centos 7.

ADD REPLYlink written 2.2 years ago by Devon Ryan1.9k
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