Question: tool error: Extract Genomic DNA
0
gravatar for Keyvan
2.4 years ago by
Keyvan0
Keyvan0 wrote:

Hi, I want to use Galaxy to "Extract Genomic DNA " in tools section for cow jun. 2014 (Bos_taurus) but an erroe occured, "This is a new dataset and not all of its data are available yet". please help what can i do for this problem? Thanks

ADD COMMENTlink modified 2.4 years ago • written 2.4 years ago by Keyvan0

Thanks for your answer, what can i do when i dont know where it will prepare, are there anything option!

ADD REPLYlink written 2.4 years ago by Keyvan0

There is no option to speed this up, you have to wait. That said this should only take few minutes max, are you still seeing it?

ADD REPLYlink written 2.4 years ago by Martin Čech ♦♦ 4.9k

Yes,i waiting but its exist yet. I think its mean that this assembly is a new dataset and newly added, and this message occured. maybe i use old assembly this message will not occure but i cant use an old version.

ADD REPLYlink written 2.4 years ago by Keyvan0

error An error occurred with this dataset: No sequences are available for 'bosTau8', request them by reporting this error This is last message i see after waiting!

ADD REPLYlink written 2.4 years ago by Keyvan0

well it seems Galaxy does not have the bosTau8 reference; please request it using the mentioned way of reporting

ADD REPLYlink written 2.4 years ago by Martin Čech ♦♦ 4.9k

I'm so thankful for your answers, would you please introduce me how can i report it.

ADD REPLYlink written 2.4 years ago by Keyvan0

there is a 'bug' icon button on each red dataset, click it, fill the report, and submit

ADD REPLYlink written 2.4 years ago by Martin Čech ♦♦ 4.9k
1
gravatar for Martin Čech
2.4 years ago by
Martin Čech ♦♦ 4.9k
United States
Martin Čech ♦♦ 4.9k wrote:

This is not an error, this means that the job is being prepared and will be run in the near future. Datasets in an error state will turn red.

ADD COMMENTlink written 2.4 years ago by Martin Čech ♦♦ 4.9k
0
gravatar for Keyvan
2.4 years ago by
Keyvan0
Keyvan0 wrote:

THANK YOU Martin Čech

ADD COMMENTlink written 2.4 years ago by Keyvan0
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