Question: Can't choose custom genome for bed files used in Stitch Gene Blocks
0
gravatar for kevingnyberg
2.5 years ago by
kevingnyberg0 wrote:

I'm trying to extract and stitch maf blocks from the UCSC Drosophila alignment that uses the most recent version of the D. melanogaster reference (BDGP R6). This build is not yet available as a built-in reference, so I was trying to add it as a custom reference. However, when running the Stitch Gene Blocks utility, I am told the bed file has an Unspecified genome build. Despite loading the BDGP R6 genome into galaxy as a fasta file, I am unable to choose a custom build for the bed file and am limited only to those genome builds that are pre-loaded. How can I get around this? Thanks.

ADD COMMENTlink modified 2.5 years ago • written 2.5 years ago by kevingnyberg0
0
gravatar for kevingnyberg
2.5 years ago by
kevingnyberg0 wrote:

I was able to figure out how to add it as a custom build. Once the fasta file was uploaded, I needed to add it as a custom build through User >> Custom Builds. It looks like it's working now.

ADD COMMENTlink written 2.5 years ago by kevingnyberg0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 175 users visited in the last hour