Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: compartive analysis for snp detect in vcf files
0
gravatar for mailmeshain
2.5 years ago by
mailmeshain • 0
mailmeshain • 0 wrote:

i want to make the comparsion of snp detection in vcf files what should be the better tool for this. asap and comparsion can be done of two files for paired only or it can be perform like one file single layout and another paired layout.

i have found out one tool vcf intersect would it be suitable for the comparsion
rna-seq snp galaxy • 995 views
ADD COMMENT • link •
modified 2.5 years ago • written 2.5 years ago by mailmeshain • 0
0
gravatar for Jennifer Hillman Jackson
2.5 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

This tool will combine datasets, so that information is grouped and queries against the merged content can be made.

Other tools create summaries that could be compared across samples/experiments. These are in the tool groups Variant Detection and VCF Manipulation.

For ideas about data reduction steps (if needed), please see: https://github.com/nekrut/galaxy/wiki/Diploid-variant-calling

Thanks, Jen, Galaxy team
ADD COMMENT • link modified 2.5 years ago • written 2.5 years ago by Jennifer Hillman Jackson ♦ 25k
0
gravatar for mailmeshain
2.5 years ago by
mailmeshain • 0
mailmeshain • 0 wrote:

thanks jen please provide me the sub tool for the compartive analysis of the vcf files in the vcf manipulation

asap

ADD COMMENT • link written 2.5 years ago by mailmeshain • 0
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 169 users visited in the last hour