Question: visualization of mapping
gravatar for andri.taruna
2.5 years ago by
andri.taruna10 wrote:

How do you visualize the sequence after you mapping it so you can do further alignment ?

alignment • 531 views
ADD COMMENTlink modified 2.5 years ago by Jennifer Hillman Jackson25k • written 2.5 years ago by andri.taruna10
gravatar for Jennifer Hillman Jackson
2.5 years ago by
United States
Jennifer Hillman Jackson25k wrote:


Visualization links are in the dataset's expanded box. Assigning the "database" (genome build) with pencil icon -> Edit attributes will link-in the external apps, which are incorporated into Galaxy, that have a browser for that build. Overview here:

Visualization link at the top of the masthead will also allow visualization for data aligned to built-in genomes and custom builds. Here is how to do set up a custom build from a custom genome for vis and certain other functions:

The Galaxy 101 tutorials have visualization components, for a simplified demonstration examples, with context: More 101 content is at the very top of this wiki:

Let us know if you need more help. I was not quite sure how you wanted to move from visualization data to additional mapping. Explaining your goals will help us to guide with a strategy.

Best, Jen, Galaxy team

ADD COMMENTlink written 2.5 years ago by Jennifer Hillman Jackson25k
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