Question: Problems Getting Galaxy AMI to Run
0
gravatar for qspencer
2.2 years ago by
qspencer0
United States
qspencer0 wrote:

Following the instructions at https://wiki.galaxyproject.org/CloudMan/AWS/GettingStarted I can't get the referenced ami:

AMI: ami-b45e59de
Name: Galaxy-CloudMan-1457720469 (active dates: 2016-03-24 -> present)

to run. There seem to be multiple start-up errors. I'm seeing errors with Postgres and NodeJSProxy service:

19:27:04 - Successfully grew file system galaxy FS
19:27:07 - NodeJSProxy service prerequisites OK; starting the service.
19:27:07 - Fault starting supervisord prog:
19:27:13 - Postgres service prerequisites OK; starting the service.
19:27:23 - ---> PROBLEM, running command '/bin/su - postgres -c "/usr/lib/postgresql/9.3/bin/pg_ctl -w -D /mnt/galaxy/db -l /tmp/pgSQL.log -o\"-p 5930\" start"' returned code '1', the following stderr: 'pg_ctl: could not start server Examine the log output. ' and stdout: 'waiting for server to start.... stopped waiting '

When I check the postgres log I find:

FATAL:  database files are incompatible with server                                                                                                                         
  2 DETAIL:  The data directory was initialized by PostgreSQL version 9.1, which is not compatible with this version 9.3.11

After that it goes into an infinite loop trying to start the NodeJSProxy:

19:43:49 - NodeJSProxy service prerequisites OK; starting the service.
19:43:49 - Fault starting supervisord prog:
19:44:05 - NodeJSProxy service prerequisites OK; starting the service.
19:44:05 - Fault starting supervisord prog:
19:44:20 - NodeJSProxy service prerequisites OK; starting the service.
19:44:20 - Fault starting supervisord prog:

Is this AMI known to be non-functional?

ami • 640 views
ADD COMMENTlink modified 2.2 years ago • written 2.2 years ago by qspencer0

Are you launching the instance from launch.usegalaxy.org/launch ?

ADD REPLYlink written 2.2 years ago by Mo Heydarian790
2
gravatar for Mo Heydarian
2.2 years ago by
Mo Heydarian790
United States
Mo Heydarian790 wrote:

Try launching Cloudman from launch.usegalaxy.org/launch. From here you just need to enter your AWS credentials (access and secret keys), name your cluster, and enter a password. Then you're ready to launch by clicking "Create a cluster". This is simpler than following the (outdated) wiki.

ADD COMMENTlink written 2.2 years ago by Mo Heydarian790
0
gravatar for qspencer
2.2 years ago by
qspencer0
United States
qspencer0 wrote:

No, as noted in my original post I followed the instructions here: https://wiki.galaxyproject.org/CloudMan/AWS/GettingStarted

ADD COMMENTlink written 2.2 years ago by qspencer0

Just to let you know, our wiki is under the process of an upgrade. This and other outdated information/help will be reorganized and updated as part of this process.

ADD REPLYlink written 2.2 years ago by Jennifer Hillman Jackson25k

This is the current Getting Started guide: https://wiki.galaxyproject.org/CloudMan/GettingStarted How did you arrive at the one you used (we need to remove those links as the information there is clearly outdated)?

ADD REPLYlink written 2.2 years ago by Enis Afgan680
0
gravatar for qspencer
2.2 years ago by
qspencer0
United States
qspencer0 wrote:

I believe it was via a Google search. It would be great if you could just remove any outdated information.

Thanks for the link to the current Getting Started page!

Quentin Spencer

ADD COMMENTlink written 2.2 years ago by qspencer0
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