Question: cannot find picard tool
1
gravatar for corinne.fasquelle
22 months ago by
corinne.fasquelle10 wrote:

Hello,

We had used a picard tool for exome target metris ... But i don't find this tool now ? Which tool can i use for thiese metrics please (% reads on and off target, % duplicates reads, etc ...)

Have a nice day and thank you in advance for your answer

Corinne

galaxy • 429 views
ADD COMMENTlink modified 22 months ago by Martin Čech ♦♦ 4.3k • written 22 months ago by corinne.fasquelle10

Where were you using Galaxy? Main (http://usegalaxy.org) or elsewhere?

The Picard tool group did update and this was applied to Galaxy Main and likely other servers. What was the original tool name? Some did change display names but are the same underlying tool.

Or you can review the repository and look for the specific underlying tool that way. Go here and scroll down to open the section Valid Tools: https://toolshed.g2.bx.psu.edu/view/devteam/picard/efc56ee1ade4

Thanks, Jen, Galaxy team

ADD REPLYlink written 22 months ago by Jennifer Hillman Jackson24k

Tank you for tour ans web,

The original name of tool is picard HS Metrics for Target sequencing. i had used this tool on usegalaxy.org server.

ADD REPLYlink written 22 months ago by corinne.fasquelle10
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