Question: cannot find picard tool
1
gravatar for corinne.fasquelle
2.4 years ago by
corinne.fasquelle10 wrote:

Hello,

We had used a picard tool for exome target metris ... But i don't find this tool now ? Which tool can i use for thiese metrics please (% reads on and off target, % duplicates reads, etc ...)

Have a nice day and thank you in advance for your answer

Corinne

galaxy • 517 views
ADD COMMENTlink modified 2.4 years ago by Martin Čech ♦♦ 4.8k • written 2.4 years ago by corinne.fasquelle10

Where were you using Galaxy? Main (http://usegalaxy.org) or elsewhere?

The Picard tool group did update and this was applied to Galaxy Main and likely other servers. What was the original tool name? Some did change display names but are the same underlying tool.

Or you can review the repository and look for the specific underlying tool that way. Go here and scroll down to open the section Valid Tools: https://toolshed.g2.bx.psu.edu/view/devteam/picard/efc56ee1ade4

Thanks, Jen, Galaxy team

ADD REPLYlink written 2.4 years ago by Jennifer Hillman Jackson25k

Tank you for tour ans web,

The original name of tool is picard HS Metrics for Target sequencing. i had used this tool on usegalaxy.org server.

ADD REPLYlink written 2.4 years ago by corinne.fasquelle10
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