In my bioinformatics classes, there is an exercise in which the students need to use the following tools: Fetch taxonomic representation, Find lowest diagnostic rank, Summarize taxonomy, Draw phylogeny.
It seems that all these tools are not available any more in the current version of Galaxy on the public instance, and that the tools seem somehow be replaced by Kraken-related tools. What is the reason? Can these be made available again? I need them urgently.
I assume I'm not the only one using Galaxy for teaching purposes, there are many tutorials around using the tools mentioned. So how can we convince our students of using Galaxy when the closed workflow system seems to be too closed?
kind regards, Stefan Weckx