Hi! I know you guys both wrote this a few months ago, but now I am in the exact same situation as as lorenasfe. Could any of you help me in the use of VCFfilter?
@ lorenasfe: how did you do it?
@ Guy Reeves: I have tried the method you explain, but I get quite lost in the process... and I cannot find the way to choose a reference genome. When I select "from the history", I am required to give a fasta file, which I do not have and which I have not used in any moment during the whole process. When I select "locally cached", it simply says "No options available" and does not allow me to make any changes.
So for these reasons, I would ask you both, or anyone else reading this post, to give me any tips. I am working with hg19. As a last resource, I even tried to use the filter in Excel, but it does not seem to bring me anywhere... I believe though, that VCFfilter should be a better tool, although I am open to hear new ideas.
20 months ago by
ron • 10