Question: RUnning cuffdiff on 2 conditions w/ no replicates
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onspotproductions • 40 wrote:
I have two sets of data; 12 hours control and experiment and 48 hours control and experiment. I am only interested in known transcripts so I will be using cuffdiff directly. My question is how do I properly combine the controls and each time period as replicate groups in cuffdiff? Do I create a group for each time period and just add the control and experiment in batch mode, or do I add the control and experiment as individual replicates in each group?
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modified 2.7 years ago
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Jennifer Hillman Jackson ♦ 25k
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written
2.8 years ago by
onspotproductions • 40
