Question: Unable to create new role in local galaxy
0
gravatar for matthias.desmet
2.4 years ago by
Belgium
matthias.desmet150 wrote:

Hi All,

When I try to create a new role in our local galaxy instance, I get an internal server error.
Galaxy reports the following error:

Error - : string index out of range
URL: http://redacted/admin/create_role
File 'lib/galaxy/web/framework/middleware/error.py', line 151 in __call__
  app_iter = self.application(environ, sr_checker)
File '/home/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/recursive.py', line 84 in __call__
  return self.application(environ, start_response)
File '/home/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpexceptions.py', line 633 in __call__
  return self.application(environ, start_response)
File 'lib/galaxy/web/framework/base.py', line 133 in __call__
  return self.handle_request( environ, start_response )
File 'lib/galaxy/web/framework/base.py', line 191 in handle_request
  body = method( trans, **kwargs )
File 'lib/galaxy/web/framework/decorators.py', line 92 in decorator
  return func( self, trans, *args, **kwargs )
File 'lib/galaxy/web/base/controllers/admin.py', line 217 in create_role
  status=status )
File 'lib/galaxy/web/framework/webapp.py', line 811 in fill_template
  return self.fill_template_mako( filename, **kwargs )
File 'lib/galaxy/web/framework/webapp.py', line 825 in fill_template_mako
  return template.render( **data )
File '/home/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/template.py', line 296 in render
  return runtime._render(self, self.callable_, args, data)
File '/home/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 660 in _render
  **_kwargs_for_callable(callable_, data))
File '/home/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 692 in _render_context
  _exec_template(inherit, lclcontext, args=args, kwargs=kwargs)
File '/home/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.7.egg/mako/runtime.py', line 718 in _exec_template
  callable_(context, *args, **kwargs)
File '/Shared/galaxy-data/database/template_cache/base.mako.py', line 66 in render_body
  __M_writer(unicode(next.body()))
File '/Shared/galaxy-data/database/template_cache/admin/dataset_security/role/role_create.mako.py', line 86 in render_body
  __M_writer(unicode(render_select( "in_groups", in_groups )))
File '/Shared/galaxy-data/database/template_cache/admin/dataset_security/role/role_create.mako.py', line 41 in render_select
  return render_render_select(context.locals_(__M_locals),name,options)
File '/Shared/galaxy-data/database/template_cache/admin/dataset_security/role/role_create.mako.py', line 135 in render_render_select
  __M_writer(filters.html_escape(unicode(option[1])))
IndexError: string index out of range


CGI Variables
-------------
  CONTENT_LENGTH: '-1'
  CONTENT_TYPE: 'application/x-www-form-urlencoded'
  DOCUMENT_ROOT: '/usr/share/nginx/html'
  HTTP_ACCEPT: 'text/html,application/xhtml+xml,application/xml;q=0.9,*/*;q=0.8'
  HTTP_ACCEPT_ENCODING: 'gzip, deflate'
  HTTP_ACCEPT_LANGUAGE: 'nl-nl'
  HTTP_CONNECTION: 'close'
  HTTP_CONTENT_LENGTH: '89'
  HTTP_CONTENT_TYPE: 'application/x-www-form-urlencoded'
  HTTP_COOKIE: 'galaxysession=c6ca0ddb55be603ab4730cffebb33cf405481d18d5cb96904a9013082a4f84bb3b444d4ff04504ad; __utma=66645180.616081967.1450186829.1450258032.1450258032.1; __utmz=66645180.1450258032.1.1.utmcsr=(direct)|utmccn=(direct)|utmcmd=(none); _ga=GA1.2.616081967.1450186829'
  HTTP_HOST: 'redacted'
  HTTP_ORIGIN: 'redacted'
  HTTP_REFERER: 'https://redacted/admin/roles?operation=create'
  HTTP_USER_AGENT: 'Mozilla/5.0 (Macintosh; Intel Mac OS X 10_11_3) AppleWebKit/601.4.4 (KHTML, like Gecko) Version/9.0.3 Safari/601.4.4'
  HTTP_X_FORWARDED_FOR: 'redacted'
  HTTP_X_REAL_IP: 'redacted'
  ORGINAL_REMOTE_ADDR: 'redacted'
  PATH_INFO: '/admin/create_role'
  REMOTE_ADDR: 'redacted'
  REMOTE_PORT: '47935'
  REQUEST_METHOD: 'POST'
  REQUEST_URI: '/admin/create_role'
  SERVER_NAME: 'localhost'
  SERVER_PORT: '80'
  SERVER_PROTOCOL: 'HTTP/1.0'
  UWSGI_SCHEME: 'http'


WSGI Variables
--------------
  application: 
  is_api_request: False
  paste.cookies: (, 'galaxysession=c6ca0ddb55be603ab4730cffebb33cf405481d18d5cb96904a9013082a4f84bb3b444d4ff04504ad; __utma=66645180.616081967.1450186829.1450258032.1450258032.1; __utmz=66645180.1450258032.1.1.utmcsr=(direct)|utmccn=(direct)|utmcmd=(none); _ga=GA1.2.616081967.1450186829')
  paste.expected_exceptions: []
  paste.httpexceptions: 
  paste.recursive.forward: 
  paste.recursive.include: 
  paste.recursive.include_app_iter: 
  paste.recursive.script_name: ''
  paste.throw_errors: True
  request_id: '584bc642c4f711e5a085fa163e761705'
  uwsgi.core: 0
  uwsgi.node: 'galaxy'
  uwsgi.version: '2.0.11.2'
  webob._parsed_post_vars: (MultiDict([('name', 'Research'), ('description', ''), ('in_groups', '2'), ('create_group_for_role', 'true'), ('create_role_button', 'Save')]), )
  webob._parsed_query_vars: (MultiDict([]), '')
  wsgi process: 'Multi process AND threads (?)'
  wsgi.file_wrapper: 
------------------------------------------------------------

We're running Galaxy 15.10 on ubuntu 14.04.3 Any Help? Thanks! Matthias

roles • 643 views
ADD COMMENTlink written 2.4 years ago by matthias.desmet150
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