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• Quality Score
  Hello, I was wondering how Galaxy calculates the quality score for NGS data? Is there any documen...
• Mapping Reads To An Shrna Library?
  Hello all, Is there a way to use a library of shRNA sequences as my custom genome when using Bow...
• Make A Vcf File
  Hi, This may be a dense question, but how do we generate a vcf file from the public version of G...
• Tophat Etc
  Dear Galaxy, Can you tell me which version of Tophat and Cufflinks is being used and whether the...
• File Conversion For Viewing
  This is probably a 'newbie' question, but after many years, I'm getting caught up in sequence a...
• Ftp Not Working
  Hi, I'm still not able to use ftp - keeps saying connection refused either through the command l...
• Microrna Seq Data Workflow Analysis
  Dear Galaxy users. I would like to use Galaxy software for my microRNA data analysis. Could some...
• How To Merge Fastq Groomer Files In Galaxy?
  Dear Galaxy users, Does anyone know how to merge several FASTQ groomer files by using Ga...
• Long Waiting Time For Bowtie Jobs?
  Hello all, I have several Bowtie jobs that have been sitting in the queue for about 24 hours now...
• Purging Deleted Histories
  Hello, Is there a way to purge deleted histories which I initially did not "permanently delete"?...
• Tophat For Illumina - Built-In Dog Genome Mislabelled
  Hi, I minor annoyance that I had found with the current implementation of "Tophat for Illumina (...
• Bioinformatician Position Opening At The Imppc Genomics Unit - Badalona - Spain
  Dear all, We are accepting aplications for an open bioinformatician position at the IMPPC Genomic...
• Get Wig File After Tophat
  Hi: I am using tophat in galaxy to analyze my paired-end RNA-seq data and find out that after th...
• Question Re: Quota Not Re-Setting After Data Deletion
  Hello, I'm using the Galaxy Main --I was trying to groom data that I had uploaded at about 11 AM...
• Does Cuffdiff Support Multiple Groups Analysis
  I have 3 groups of accepted hits, each group has 3 replicates. When I add 3 groups with correspon...
• Lastz
  Hello folks Anyone else having trouble with running Lastz to map? Jobs are being sent but not...
• Entrez Id To Refseq Or Gene Symbol
  Giovanni: The conversion table can be found at NCBI's FTP site for Entrez gene. ftp://ftp.ncbi....
• Look For Wig File
  Hi: everybody I am using tophat in galaxy to analyze my paired-end RNA-seq data and find out tha...