Question: "NGS: Picard (beta) Mark Duplicate reads" missing at Main
0
gravatar for vanam
2.9 years ago by
vanam30
United States
vanam30 wrote:

It looks like "NGS: Picard (beta) Mark Duplicate reads" is no longer available at Main. Is it possible to get this older tool back?

Thanks!

Marcy

galaxy • 915 views
ADD COMMENTlink modified 2.9 years ago • written 2.9 years ago by vanam30

Thanks Martin.

I don't have a dataset that was created with the old version. Is there another way to access the old version?

Marcy

ADD REPLYlink written 2.9 years ago by vanam30
1

You can use https://usegalaxy.org/root?tool_id=toolshed.g2.bx.psu.edu/repos/devteam/picard/rgPicardMarkDups/1.56.0 to get there directly.

However I recommend using the latest, bugs were fixed.

ADD REPLYlink modified 2.9 years ago • written 2.9 years ago by Martin Čech ♦♦ 4.9k
1
gravatar for Martin Čech
2.9 years ago by
Martin Čech ♦♦ 4.9k
United States
Martin Čech ♦♦ 4.9k wrote:

The new version of the tool is https://usegalaxy.org/root?tool_id=toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/1.126.0

The older versions are not removed but rather hidden. You can use them by starting a rerun on a dataset that has been created with the old version.

ADD COMMENTlink written 2.9 years ago by Martin Čech ♦♦ 4.9k
0
gravatar for vanam
2.9 years ago by
vanam30
United States
vanam30 wrote:

Thanks so much Martin.

Is it possible to get a direct link to "NGS: Picard (beta) Add or Replace Groups" as well?

ADD COMMENTlink written 2.9 years ago by vanam30
1

https://usegalaxy.org/root?tool_id=toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_ARRG/1.56.0

ADD REPLYlink written 2.9 years ago by Martin Čech ♦♦ 4.9k

Great.

Thanks!

Marcy

ADD REPLYlink written 2.9 years ago by vanam30
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