Question: how to generate fastQ format data to output for assembly
gravatar for xuemeis
2.5 years ago by
United States
xuemeis0 wrote:



I trimmed the data in fastQ format, and wanted to output the data again in fastQ format and submitted for assembly. How can I do it?




fastq • 604 views
ADD COMMENTlink modified 2.4 years ago by Jennifer Hillman Jackson24k • written 2.5 years ago by xuemeis0
gravatar for Jennifer Hillman Jackson
2.4 years ago by
United States
Jennifer Hillman Jackson24k wrote:


Trimming data should not alter the datatype. My guess is that you need to have a different or more specific type fastq datatype assigned. The version most Galaxy wraps require is fastqsanger. Here is how to confirm the current sub-type, transform to fastqsanger, or reassign the datatype to fastqsanger (sometimes all that is needed - but double check!):

Best, Jen, Galaxy team

ADD COMMENTlink written 2.4 years ago by Jennifer Hillman Jackson24k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 90 users visited in the last hour