Question: how to generate fastQ format data to output for assembly
0
gravatar for xuemeis
2.9 years ago by
xuemeis0
United States
xuemeis0 wrote:

 

 

I trimmed the data in fastQ format, and wanted to output the data again in fastQ format and submitted for assembly. How can I do it?

 

 

 

fastq • 735 views
ADD COMMENTlink modified 2.9 years ago by Jennifer Hillman Jackson25k • written 2.9 years ago by xuemeis0
0
gravatar for Jennifer Hillman Jackson
2.9 years ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

Trimming data should not alter the datatype. My guess is that you need to have a different or more specific type fastq datatype assigned. The version most Galaxy wraps require is fastqsanger. Here is how to confirm the current sub-type, transform to fastqsanger, or reassign the datatype to fastqsanger (sometimes all that is needed - but double check!):

https://wiki.galaxyproject.org/Support#Dataset_special_cases

Best, Jen, Galaxy team

ADD COMMENTlink written 2.9 years ago by Jennifer Hillman Jackson25k
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