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• pileup to vcf
  Is there a tool on public galaxy that will take pileup file or filter pileup output to VCF?
• Filter Varscan VCF
  Hello, I have a VCF file obtained from the Varscan tool. I want to filter the variants based on ...
• VCF filter only allow one option of filtering
  I am using this version VCF data in a variety of attributes (Galaxy Version 0.0.3)of VCF filter ...
• Split VCF file
  I would like help splitting a large vcf file containing WGS data into smaller files. Using Gala...
• Filtering A Vcf File
  I’m using a local instance of Galaxy. I’d like to filter a VCF file for SNPs that have passed fi...
• Filtering on tabular dataset from vcf
  Hello, I tab delimited a vcf file so that I could filter on the 'type' information, which was in...
• SNPsift filtering problem
  Dear All. I would like to filter my VCF file with SNPsift for DP, Quality, SRP, SAP and Effect (...
• galaxy full details
  describe about fastqc,fastq groomer, bwa ilumima, sam tools, mpileup, varscan, vcf filter, plz te...
• can't get any VCF tools to work
  Hi, I can't seem to get any of the VCF tools to work on my combined VCF file, can't sort it, can'...
• is the VCF filtering function working?
  Hi there, I was wondering if the NGS: VCF manipulation: VCFfilter function is actually working. ...
• How can I annotate a vcf file created with Freebayes with rs#
  Hi All, I have a vcf file created in freebayes (v.0.0.2), and I would like to annotate the file...
• Using Snpeff And Snpsift In Galaxy
  I have a VCF file and I want to filter it for nonsynonymous/ deletion/ insertion seq variations....
• Filtering Variants using Snpsift filter and SnpEff
  Hi, I have a bunch of variants in .VCF file which I got through the unified genotyper tool. Now ...
• Slice VCF not retaining INFO data
  Hi folks   I'm using the Slice VCF tools to extract variants from a .vcf file that fall within ...