Question: empty QUAL field
0
gravatar for verakh
2.7 years ago by
verakh0
United States
verakh0 wrote:

Hi,

I'm trying to analyze polymorphic sites in the individual. After running Naive Variant Caller tool with my database I got VCF file with empty DUAL and FILTER fields. What could be a reason? Thank you.

variant caller • 606 views
ADD COMMENTlink modified 2.7 years ago by Jennifer Hillman Jackson25k • written 2.7 years ago by verakh0
1
gravatar for Jennifer Hillman Jackson
2.7 years ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

Would you like to share a link to your history and have our team review? Since you seem to be working at http://usegalaxy.org, this is more direct than attempting to send in parameters and sample data through Biostars.

Generate a share link, paste that into an email to galaxy-bugs@lists.galaxyproject.org, and include a link to this post so we can associate the two. Be certain to leave all inputs and job runs in the analysis as undeleted and that all were executed/exist in the shared history. It would also be good to note the problematic NVC dataset by number so that the correct data is reviewed.

Thanks! Jen, Galaxy team

 

ADD COMMENTlink written 2.7 years ago by Jennifer Hillman Jackson25k

Hello Jen!

Thanks, I figure it out by myself.

Thanks a lot! Vera

ADD REPLYlink written 2.7 years ago by verakh0

Glad to know, thanks Vera! Jen

ADD REPLYlink written 2.7 years ago by Jennifer Hillman Jackson25k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 135 users visited in the last hour