Question: Obtaining Std. Dev for Distance between Mate Pairs
gravatar for english.server
3.1 years ago by
english.server0 wrote:

Hi all,

How may I calculate "Std. Dev for  Distance between Mate Pairs" needed by Tophat?

ADD COMMENTlink modified 3.1 years ago by Jennifer Hillman Jackson25k • written 3.1 years ago by english.server0
gravatar for Jennifer Hillman Jackson
3.1 years ago by
United States
Jennifer Hillman Jackson25k wrote:


Try using the default settings first. Then if the number of properly paired reads is low, use the initial mapping coordinates to determine the actual distance and deviation before re-running the mapping step.

Hopefully this helps, Jen, Galaxy team

ADD COMMENTlink written 3.1 years ago by Jennifer Hillman Jackson25k
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