Question: Cufflinks "perform quartile normalization" issue
gravatar for lnrdns
3.1 years ago by
United States
lnrdns0 wrote:


I'm trying to run cufflinks in Galaxy (Galaxy Tool Version with the quartile normalization option, but I can't see it anywhere. I have "perform bias Correction", but I don't see any "perform quartile normalization".

What am I doing wrong?


thank you so much for your help!




cufflinks galaxy • 769 views
ADD COMMENTlink modified 3.1 years ago by Jennifer Hillman Jackson25k • written 3.1 years ago by lnrdns0
gravatar for Jennifer Hillman Jackson
3.1 years ago by
United States
Jennifer Hillman Jackson25k wrote:


This normalization has been updated in recent versions of the tool. Look under the option "Library normalization method".  The choices are defined in the manual here:

Hope this helps! Jen, Galaxy team

ADD COMMENTlink written 3.1 years ago by Jennifer Hillman Jackson25k
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