I am analyzing DNAseq data. I obtained a SAM file by using "Map with BWA for Illumina data". However, when I try to transform that SAM file into BAM file, using "SAM-to-BAM" module, it stops and says:
Galaxy attempted to build the BAM index with samtools 1.0+ but failed: [Errno 2] No such file or directory: '/galaxy-repl/main/jobdir/010/521/10521429/__dataset_21432079_metadata_temp_file_S37hQZ.bai' Fatal error: Exit code 139 (Error) /galaxy-repl/main/
Could anyone, please, suggest what is the problem and how to solve this?
I'm running the public instance of Galaxy (http://usegalaxy.org).
Thank you very much!