Question: Galaxy showing and hiding tools as refreshed?
0
vebaev • 130 wrote:
I have installed some tools, but when I click on Galaxy logo and on Analyse data I see tools dissapearing and showing. In general I have to have 2 new groups of tools:
-NGS FASTQ manipulation
-NGS mappers
but I see these 2 cases randomly when I refrech the page on Galaxy logo or on Analyse data top button:
Statistics
Graph/Display Data
FASTQ Groomer convert between various FASTQ quality formats
FASTQ Summary Statistics by column
Clip adapter sequences
Compute quality statistics
Draw nucleotides distribution chart
Barcode Splitter
Rename sequences
Draw quality score boxplot
FASTQ to FASTA converter
FASTA Width formatter
Quality format converter (ASCII-Numeric)
Length Distribution chart
RNA/DNA converter
Reverse-Complement
Remove sequencing artifacts
NGS mappers
BLAT
On this one all FASTQ are appearing without group on the root menu, and mappers are missing (bowtie and tophat)
Statistics
Graph/Display Data
NGS FASTQ manipulations
FastQC Read Quality reports
FASTQ to FASTA converter
Filter by quality
Trim sequences
Collapse sequences
Cutadapt Remove adapter sequences from Fastq/Fasta
Bowtie2 - map reads against reference genome
Tophat Gapped-read mapper for RNA-seq data
Than I see FASTQ groupped but some missing, and mappers are again ungroupped.......
ADD COMMENT
• link
•
modified 3.3 years ago
by
Bjoern Gruening ♦ 5.1k
•
written
3.3 years ago by
vebaev • 130
I see also this behaviour in the data managers section - regreching it, it shows me randonly bowtie2 index manager or SAM FASTA index - builder manager but not all together?!....