I would like to use the BWA mapper tool so I installed the tool "bwa" from "devteam" from main toolshed in our local galaxy: https://toolshed.g2.bx.psu.edu/view/devteam/bwa/ac30bfd3e2a8
To get the genome index I installed "data_manager_bwa_mem_index_builder": https://toolshed.g2.bx.psu.edu/view/devteam/data_manager_bwa_mem_index_builder/6da5d738041d
When trying to run the data manager on any fasta genome (via "Manage local data (beta)", "Run Data Manager Tools", "BWA-MEM index - builder") the job immediately stops in error state. But it doesn't show any error (the stderr and stdout are empty) so I'm kind of in the dark what went wrong.
How can I find out what the problem is? I do have ssh access to the galaxy server btw.
The command involved as shown in "View Data Manager Jobs":
python /mnt/data/galaxy-home/tst-ctmm-gal/shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/data_manager_bwa_mem_index_builder/6da5d738041d/data_manager_bwa_mem_index_builder/data_manager/bwa_mem_index_builder.py "/opt/galaxy/galaxy-dist/database/files/001/dataset_1094.dat" --fasta_filename "/mnt/galaxyIndices/genomes/phiX174/phix/seq/phix.fa" --fasta_dbkey "phix" --fasta_description "phiX174" --data_table_name "bwa_mem_indexes"