Question: Data Libraries Problems
0
juan perin • 20 wrote:
In my latest pull from the galaxy update server, something has caused
my
instance to act up. I'm getting an error when trying to upload data
into
libraries. This is the text based error:
URL:
http://variome.chop.edu:8082/library_common/upload_library_dataset
File
'/home/perin/galaxy_dist2/eggs/WebError-0.8a-
py2.6.egg/weberror/evalexception/middleware.py',
line 364 in respond
app_iter = self.application(environ, detect_start_response)
File
'/home/perin/galaxy_dist2/eggs/Paste-1.6-py2.6.egg/paste/debug/prints.
py',
line 98 in __call__
environ, self.app)
File
'/home/perin/galaxy_dist2/eggs/Paste-1.6-py2.6.egg/paste/wsgilib.py',
line 539 in intercept_output
app_iter = application(environ, replacement_start_response)
File '/home/perin/galaxy_dist2/eggs/Paste-1.6-py2.6.egg/paste/recursiv
e.py',
line 80 in __call__
return self.application(environ, start_response)
File
'/home/perin/galaxy_dist2/eggs/Paste-1.6-py2.6.egg/paste/httpexception
s.py',
line 632 in __call__
return self.application(environ, start_response)
File '/home/perin/galaxy_dist2/lib/galaxy/web/framework/base.py', line
145
in __call__
body = method( trans, **kwargs )
File
'/home/perin/galaxy_dist2/lib/galaxy/web/controllers/library_common.py
',
line 978 in upload_library_dataset
**kwd )
File
'/home/perin/galaxy_dist2/lib/galaxy/web/controllers/library_common.py
',
line 1158 in upload_dataset
message=util.sanitize_text( message ),
File '/home/perin/galaxy_dist2/lib/galaxy/util/__init__.py', line 138
in
sanitize_text
for c in text:
TypeError: 'NoneType' object is not iterable
Strangely, the data gets queued up anyway, if you go back to the
library,
and you can even see the first few lines of the file in the preview,
but it
remains queued and never fully becomes available. Not sure what's
going on,
so was hoping for any suggestions.
I just updated to Postgresql as well, but that didn't change the
problem.
Thanks.
Juan
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•
modified 8.4 years ago
by
Greg Von Kuster ♦ 810
•
written
8.4 years ago by
juan perin • 20
